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StefanProject administrator Project developer Project tester Project scientist Send message
Joined: 5 Mar 13 Posts: 348 Credit: 0 RAC: 0 Level
![Newbie](img/badges/aa/badge_default.png) Scientific publications
![No publications yet wat](img/badges/papers/badge_pub_default.png) |
Despite its name, this protein is not villainous!
Similar technique as with BenAdapt but now with a different protein system. Lets see how fast we can fold this protein :)
I sent it to the long queue. Work units should take around 6.7 hours on a GTX 580
If you want to bask at its folded beauty (which I would hope to achieve) take a look at this rendering (not by our group): |
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only running 75% utilization on 660 ti on win7
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XtremeSystems.org - #1 Team in GPUGrid |
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I suppose that's because the molecule is rather small?
MrS
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Scanning for our furry friends since Jan 2002 |
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StefanProject administrator Project developer Project tester Project scientist Send message
Joined: 5 Mar 13 Posts: 348 Credit: 0 RAC: 0 Level
![Newbie](img/badges/aa/badge_default.png) Scientific publications
![No publications yet wat](img/badges/papers/badge_pub_default.png) |
I brought these back to life on the long and short queues as VillinA* and VillinTiny* to test a new methodology.
They are very few (~100 - 200) WU's so you might not even notice them.
The ones in the short queue (VillinTiny) should be extremely short but I configured the credits accordingly. |
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skgivenVolunteer moderator Volunteer tester
![Avatar](https://www.gravatar.com/avatar/77be8b04dc35f6033048abca3f3803c4?s=100&d=identicon) Send message
Joined: 23 Apr 09 Posts: 3968 Credit: 1,995,359,260 RAC: 0 Level
![Histidine - More than 1.5B credits His](img/badges/aa/badge_his.png) Scientific publications
![Top 100% (2761st/2932) contribution to Buch et al, J. Chem. Inf. Model. 2010 wat](img/badges/papers/badge_pub_white.png) ![Top 75% (1680th/2466) contribution to Sadiq et al, Proteins 2010 wat](img/badges/papers/badge_pub_silver.png) ![Top 10% (266th/3118) contribution to Selent et al, PLoS Comput Biol 2010 wat](img/badges/papers/badge_pub_emerald.png) ![Top 1% (15th/4410) contribution to Buch et al, PNAS 2011 wat](img/badges/papers/badge_pub_sapphire.png) ![Top 1% (22nd/2450) contribution to Giorgino et al, J. Chem. Theory Comput. 2011 wat](img/badges/papers/badge_pub_sapphire.png) ![Top 1% (15th/9662) contribution to Buch et al, J. Chem. Theory Comput. 2011 wat](img/badges/papers/badge_pub_sapphire.png) ![Top 1% (27th/3113) contribution to Giorgino et al, J. Chem. Theory Comput, 2012 wat](img/badges/papers/badge_pub_sapphire.png) ![Top 1% (14th/5798) contribution to Sadiq et al, PNAS 2012 wat](img/badges/papers/badge_pub_sapphire.png) ![Top 25% (352nd/1995) contribution to Venken et al, JCTC 2013 wat](img/badges/papers/badge_pub_ruby.png) ![Top 1% (15th/3349) contribution to Buch et al, JCIM 2013 wat](img/badges/papers/badge_pub_sapphire.png) ![Top 10% (49th/3864) contribution to Dainese et al, Biochem. J. 2013 wat](img/badges/papers/badge_pub_emerald.png) ![Top 10% (62nd/4477) contribution to Pérez-Hernández et al, JCP 2013 wat](img/badges/papers/badge_pub_emerald.png) ![Top 10% (70th/2163) contribution to Bisignano et al. JCIM 2014 wat](img/badges/papers/badge_pub_emerald.png) ![Top 10% (14th/1283) contribution to Doerr et al. JCTC 2014 wat](img/badges/papers/badge_pub_emerald.png) ![Top 10% (45th/2838) contribution to Stanley et al, Nat Commun 2014 wat](img/badges/papers/badge_pub_emerald.png) ![Top 1% (18th/3183) contribution to Lauro et al., JCIM 2014 wat](img/badges/papers/badge_pub_sapphire.png) ![Top 1% (27th/3611) contribution to Ferruz et al., JCIM 2015 wat](img/badges/papers/badge_pub_sapphire.png) ![Top 1% (34th/4128) contribution to Ferruz et al., Sci Rep 2016 wat](img/badges/papers/badge_pub_sapphire.png) ![Top 1% (49th/4815) contribution to Stanley et al., Sci Rep 2016 wat](img/badges/papers/badge_pub_sapphire.png) ![Top 10% (105th/4730) contribution to Noe et al., Nat Chem 2017 wat](img/badges/papers/badge_pub_emerald.png) ![Top 100% (1222nd/1348) contribution to Doerr et al, JCTC 2017 wat](img/badges/papers/badge_pub_white.png) ![Top 1% (35th/4634) contribution to Martinez-Rosell et al, JCIM 2018 wat](img/badges/papers/badge_pub_sapphire.png) ![Top 50% (485th/1656) contribution to Kapoor et al., Sci Rep 2017 wat](img/badges/papers/badge_pub_gold.png) ![Top 10% (50th/1885) contribution to Ferruz et al., Sci Rep 2018 wat](img/badges/papers/badge_pub_emerald.png) ![Top 75% (551st/1022) contribution to Wang et al., ACS Cent. Sci. 2019 wat](img/badges/papers/badge_pub_silver.png) ![Top 25% (307th/1541) contribution to Rodriguez-Espigares et al., Nat Meth 2020 wat](img/badges/papers/badge_pub_ruby.png) ![Top 10% (29th/1450) contribution to Herrera-Nieto et al, Sci Rep 2020 wat](img/badges/papers/badge_pub_emerald.png) ![Top 10% (334th/6232) contribution to Herrera-Nieto et al, JCIM 2020 wat](img/badges/papers/badge_pub_emerald.png) |
The VillinTiny tasks work:
770 Linux,
e1s91_1-SDOERR_VillinTiny2-0-1-RND1081_0 5271812 152450 12 Mar 2014 | 17:40:03 UTC 12 Mar 2014 | 17:51:16 UTC Completed and validated 372.40 367.88 750.00 Short runs (2-3 hours on fastest card) v8.00 (cuda42)
e1s51_1-SDOERR_VillinTiny2-0-1-RND5947_0 5271765 152450 12 Mar 2014 | 17:33:20 UTC 12 Mar 2014 | 17:44:51 UTC Completed and validated 374.30 369.18 750.00 Short runs (2-3 hours on fastest card) v8.00 (cuda42)
e1s46_1-SDOERR_VillinTiny2-0-1-RND9298_0 5271759 152450 12 Mar 2014 | 18:51:13 UTC 12 Mar 2014 | 20:07:02 UTC Completed and validated 369.98 365.84 750.00 Short runs (2-3 hours on fastest card) v8.00 (cuda55)
770 W7,
e1s53_1-SDOERR_VillinTiny2-0-1-RND4146_1 5271767 139265 12 Mar 2014 | 19:23:37 UTC 12 Mar 2014 | 19:31:56 UTC Completed and validated 441.12 223.25 750.00 Short runs (2-3 hours on fastest card) v8.15 (cuda55)
Just over 6min on Linux and just over 7min on W7.
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StefanProject administrator Project developer Project tester Project scientist Send message
Joined: 5 Mar 13 Posts: 348 Credit: 0 RAC: 0 Level
![Newbie](img/badges/aa/badge_default.png) Scientific publications
![No publications yet wat](img/badges/papers/badge_pub_default.png) |
That is very short indeed. Then the long ones should take around 5-6 hours to crunch. |
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Matt ![](./img/badges/donor.png) ![Avatar](user_profile/images/94527_avatar.jpg) Send message
Joined: 11 Jan 13 Posts: 216 Credit: 846,538,252 RAC: 0 Level
![Glutamic Acid - More than 750M credits Glu](img/badges/aa/badge_glu.png) Scientific publications
![Top 10% (71st/2163) contribution to Bisignano et al. JCIM 2014 wat](img/badges/papers/badge_pub_emerald.png) ![Top 10% (64th/1283) contribution to Doerr et al. JCTC 2014 wat](img/badges/papers/badge_pub_emerald.png) ![Top 10% (58th/2838) contribution to Stanley et al, Nat Commun 2014 wat](img/badges/papers/badge_pub_emerald.png) ![Top 10% (202nd/3183) contribution to Lauro et al., JCIM 2014 wat](img/badges/papers/badge_pub_emerald.png) ![Top 10% (167th/3611) contribution to Ferruz et al., JCIM 2015 wat](img/badges/papers/badge_pub_emerald.png) ![Top 10% (89th/4128) contribution to Ferruz et al., Sci Rep 2016 wat](img/badges/papers/badge_pub_emerald.png) ![Top 10% (210th/4815) contribution to Stanley et al., Sci Rep 2016 wat](img/badges/papers/badge_pub_emerald.png) ![Top 10% (452nd/4730) contribution to Noe et al., Nat Chem 2017 wat](img/badges/papers/badge_pub_emerald.png) ![Top 10% (54th/1348) contribution to Doerr et al, JCTC 2017 wat](img/badges/papers/badge_pub_emerald.png) ![Top 10% (160th/4634) contribution to Martinez-Rosell et al, JCIM 2018 wat](img/badges/papers/badge_pub_emerald.png) ![Top 25% (327th/1656) contribution to Kapoor et al., Sci Rep 2017 wat](img/badges/papers/badge_pub_ruby.png) ![Top 10% (55th/1885) contribution to Ferruz et al., Sci Rep 2018 wat](img/badges/papers/badge_pub_emerald.png) ![Top 100% (661st/672) contribution to Martinez-Rosell et al, JCIM 2020 wat](img/badges/papers/badge_pub_white.png) ![Top 10% (21st/1450) contribution to Herrera-Nieto et al, Sci Rep 2020 wat](img/badges/papers/badge_pub_emerald.png) ![Top 90% (5321st/6232) contribution to Herrera-Nieto et al, JCIM 2020 wat](img/badges/papers/badge_pub_bronze.png) |
Running one on a 780Ti w/ W7 right now. It's ~65% utilization, but still enough to keep me at full boost.
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Matt ![](./img/badges/donor.png) ![Avatar](user_profile/images/94527_avatar.jpg) Send message
Joined: 11 Jan 13 Posts: 216 Credit: 846,538,252 RAC: 0 Level
![Glutamic Acid - More than 750M credits Glu](img/badges/aa/badge_glu.png) Scientific publications
![Top 10% (71st/2163) contribution to Bisignano et al. JCIM 2014 wat](img/badges/papers/badge_pub_emerald.png) ![Top 10% (64th/1283) contribution to Doerr et al. JCTC 2014 wat](img/badges/papers/badge_pub_emerald.png) ![Top 10% (58th/2838) contribution to Stanley et al, Nat Commun 2014 wat](img/badges/papers/badge_pub_emerald.png) ![Top 10% (202nd/3183) contribution to Lauro et al., JCIM 2014 wat](img/badges/papers/badge_pub_emerald.png) ![Top 10% (167th/3611) contribution to Ferruz et al., JCIM 2015 wat](img/badges/papers/badge_pub_emerald.png) ![Top 10% (89th/4128) contribution to Ferruz et al., Sci Rep 2016 wat](img/badges/papers/badge_pub_emerald.png) ![Top 10% (210th/4815) contribution to Stanley et al., Sci Rep 2016 wat](img/badges/papers/badge_pub_emerald.png) ![Top 10% (452nd/4730) contribution to Noe et al., Nat Chem 2017 wat](img/badges/papers/badge_pub_emerald.png) ![Top 10% (54th/1348) contribution to Doerr et al, JCTC 2017 wat](img/badges/papers/badge_pub_emerald.png) ![Top 10% (160th/4634) contribution to Martinez-Rosell et al, JCIM 2018 wat](img/badges/papers/badge_pub_emerald.png) ![Top 25% (327th/1656) contribution to Kapoor et al., Sci Rep 2017 wat](img/badges/papers/badge_pub_ruby.png) ![Top 10% (55th/1885) contribution to Ferruz et al., Sci Rep 2018 wat](img/badges/papers/badge_pub_emerald.png) ![Top 100% (661st/672) contribution to Martinez-Rosell et al, JCIM 2020 wat](img/badges/papers/badge_pub_white.png) ![Top 10% (21st/1450) contribution to Herrera-Nieto et al, Sci Rep 2020 wat](img/badges/papers/badge_pub_emerald.png) ![Top 90% (5321st/6232) contribution to Herrera-Nieto et al, JCIM 2020 wat](img/badges/papers/badge_pub_bronze.png) |
...and complete at 4:52:37 (Long run WU).
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skgivenVolunteer moderator Volunteer tester
![Avatar](https://www.gravatar.com/avatar/77be8b04dc35f6033048abca3f3803c4?s=100&d=identicon) Send message
Joined: 23 Apr 09 Posts: 3968 Credit: 1,995,359,260 RAC: 0 Level
![Histidine - More than 1.5B credits His](img/badges/aa/badge_his.png) Scientific publications
![Top 100% (2761st/2932) contribution to Buch et al, J. Chem. Inf. Model. 2010 wat](img/badges/papers/badge_pub_white.png) ![Top 75% (1680th/2466) contribution to Sadiq et al, Proteins 2010 wat](img/badges/papers/badge_pub_silver.png) ![Top 10% (266th/3118) contribution to Selent et al, PLoS Comput Biol 2010 wat](img/badges/papers/badge_pub_emerald.png) ![Top 1% (15th/4410) contribution to Buch et al, PNAS 2011 wat](img/badges/papers/badge_pub_sapphire.png) ![Top 1% (22nd/2450) contribution to Giorgino et al, J. Chem. Theory Comput. 2011 wat](img/badges/papers/badge_pub_sapphire.png) ![Top 1% (15th/9662) contribution to Buch et al, J. Chem. Theory Comput. 2011 wat](img/badges/papers/badge_pub_sapphire.png) ![Top 1% (27th/3113) contribution to Giorgino et al, J. Chem. Theory Comput, 2012 wat](img/badges/papers/badge_pub_sapphire.png) ![Top 1% (14th/5798) contribution to Sadiq et al, PNAS 2012 wat](img/badges/papers/badge_pub_sapphire.png) ![Top 25% (352nd/1995) contribution to Venken et al, JCTC 2013 wat](img/badges/papers/badge_pub_ruby.png) ![Top 1% (15th/3349) contribution to Buch et al, JCIM 2013 wat](img/badges/papers/badge_pub_sapphire.png) ![Top 10% (49th/3864) contribution to Dainese et al, Biochem. J. 2013 wat](img/badges/papers/badge_pub_emerald.png) ![Top 10% (62nd/4477) contribution to Pérez-Hernández et al, JCP 2013 wat](img/badges/papers/badge_pub_emerald.png) ![Top 10% (70th/2163) contribution to Bisignano et al. JCIM 2014 wat](img/badges/papers/badge_pub_emerald.png) ![Top 10% (14th/1283) contribution to Doerr et al. JCTC 2014 wat](img/badges/papers/badge_pub_emerald.png) ![Top 10% (45th/2838) contribution to Stanley et al, Nat Commun 2014 wat](img/badges/papers/badge_pub_emerald.png) ![Top 1% (18th/3183) contribution to Lauro et al., JCIM 2014 wat](img/badges/papers/badge_pub_sapphire.png) ![Top 1% (27th/3611) contribution to Ferruz et al., JCIM 2015 wat](img/badges/papers/badge_pub_sapphire.png) ![Top 1% (34th/4128) contribution to Ferruz et al., Sci Rep 2016 wat](img/badges/papers/badge_pub_sapphire.png) ![Top 1% (49th/4815) contribution to Stanley et al., Sci Rep 2016 wat](img/badges/papers/badge_pub_sapphire.png) ![Top 10% (105th/4730) contribution to Noe et al., Nat Chem 2017 wat](img/badges/papers/badge_pub_emerald.png) ![Top 100% (1222nd/1348) contribution to Doerr et al, JCTC 2017 wat](img/badges/papers/badge_pub_white.png) ![Top 1% (35th/4634) contribution to Martinez-Rosell et al, JCIM 2018 wat](img/badges/papers/badge_pub_sapphire.png) ![Top 50% (485th/1656) contribution to Kapoor et al., Sci Rep 2017 wat](img/badges/papers/badge_pub_gold.png) ![Top 10% (50th/1885) contribution to Ferruz et al., Sci Rep 2018 wat](img/badges/papers/badge_pub_emerald.png) ![Top 75% (551st/1022) contribution to Wang et al., ACS Cent. Sci. 2019 wat](img/badges/papers/badge_pub_silver.png) ![Top 25% (307th/1541) contribution to Rodriguez-Espigares et al., Nat Meth 2020 wat](img/badges/papers/badge_pub_ruby.png) ![Top 10% (29th/1450) contribution to Herrera-Nieto et al, Sci Rep 2020 wat](img/badges/papers/badge_pub_emerald.png) ![Top 10% (334th/6232) contribution to Herrera-Nieto et al, JCIM 2020 wat](img/badges/papers/badge_pub_emerald.png) |
"the long ones should take around 5-6 hours to crunch".
I don't know if it's a subtle of a lax way of announcing a new WU type, but I like it :)
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FAQ's
HOW TO:
- Opt out of Beta Tests
- Ask for Help |
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